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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a wildfire. The Science After a wildfire burns, … using both DNA and messenger RNA (mRNA) sequencing to identify those traits that have helped fungi, bacteria and viruses … work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed under the …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… metagenomic sequencing and single-cell sequencing. For years, extracting single cells and then amplifying their DNA for genome sequencing was no easy task. The … that were acquired through it were usually only around 30% complete.  Described in  ISME Communications , a method …
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JGI Workshops at PAG
… it to the attention of the wider genomics community. Jan. 13 workshop: BER Plant Genomic Science In this workshop, we …
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Exploring Phages at JGI
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MGM Workshop at Fisabio Summer School 2025
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on … and it has legacy mining that goes back more than 100 years. And in particular, there’s an inflow from the mining … think like it’s, it’s this unique time where the preceding 300 years, that change was not occurring at that pace, …
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iPHoP: A Matchmaker for Phages and their Hosts
Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo … precise genome editing. This means that scientists can modify gene expression, or delete genes, all with the rapid …
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Work With the JGI! Tips for a Winning CSP Proposal
… related to energy and the environment several times a year. A few proposal calls have deadlines coming up – in …
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David Goodstein
… in Physics, Cornell University, NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference … structural mutation in the laboratory. The Plant Cell 35 (2), 644-672 A Sreedasyam et al., 2023. JGI Plant Gene … . Annual Review of Plant Biology 72, 411. Gordon et al., 2020.  Gradual polyploid genome evolution revealed by …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… uncultured in laboratories. Other firsts followed. The next year, the JGI team reported the first closed and finished … JGI’s single cell genomics capabilities to assemble, identify, and characterize more than 200 microbial genomes that were mapped to nearly 30 major previously uncharted branches of the tree of life. …
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