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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal … microorganisms, by sequencing large populations of bacteria and archaea in their natural environments using …
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The JGI announces 2024 awardees for our Community Science Program annual call
Annual Call. “It’s exciting to see the diverse portfolio of successful CSP proposals this year,” noted Tanja Woyke, who heads JGI’s … and I look forward to seeing their outcomes.” The annual CSP call is focused on large-scale genomic science projects …
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The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex
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Jeremy Schmutz
… human chromosomes 5, 16, and 19. Following the completion of the human genome project in 2003, he developed … Institute and the collaborative projects funded through the CSP program. In addition to continuing to develop strategies … switchgrass. Nature 590: 438-444. Mamidi, S et al. 2020. A genome resource for green millet Setaria viridis …
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JGI Announces 2025 New Investigator Portfolio
You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel … accepted proposals.  The New Investigator call , part of our  Community Science Program , allows us to work and share our tools with a widening circle of researchers whose work aligns with DOE missions .  Below …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling … years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, while fungi … to look at gene expression in both plant cells and fungal cells. Using a technique called single nuclei RNA …
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Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01
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Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps
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Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … where I was a graduate student. Aflatoxin, of course, is a fungal natural product which is a liver toxin when humans … , I think you’ll have heard how a lot of us who work in fungal natural products, especially in the old days, saw how …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling … years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, while fungi … to look at gene expression in both plant cells and fungal cells. Using a technique called single nuclei RNA …
Learn more
Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for … Cited Researchers list, and has appeared on the list since 2020. …
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