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… very excited to start working with this years’ crop of CSP recipients, over half of which are first-time PIs on a … “The proposed research by these PIs will address a broad diversity of important scientific questions relevant to the … success. “ The CSP Annual Call is focused on large-scale genomic science projects relevant to the DOE’s Office of …

… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers … will have all of these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists at … to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to …

… plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for … help researchers better understand related genes in more complex plants that could be applied toward DOE-relevant … of plants.  Pangenomes encompass a plant’s genetic diversity beyond a single reference genome, which is key to …

… Applications group to operate a similar single-cell genomics pipeline that provides JGI users access to the … His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional activities of specific microbial groups within complex communities.  The Microscale Applications group also …

… Institute and the collaborative projects funded through the CSP program. In addition to continuing to develop strategies … Healey, A.L., Garsmeur, O., Lovell, J.T. et al.  2024.The complex polyploid genome architecture of sugarcane. Nature … Nucleic Acids Res . 51, 1–24.Lovell, JT et al. 2021. Genomic mechanisms of climate adaptation in polyploid …

… pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to identify and characterize genomic information from uncultivated microbes and viruses. …

… between microbial life and environment, and using metagenomics to study these complex natural systems. Microbial communities living in … are of particular interest. Matt also supports various CSP and FICUS user projects for the Metagenome Program. …

… Sorghum genome serves as a reference for the highly complex sugarcane genome . The Science Most species are … sequence and assemble, in turn limiting the use of modern, genomic breeding in these crops. For diploid species, … now underway as part of the JGI Community Science Program (CSP), a critical factor in developing sugarcane as a …

… Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, advancements … Lab), have taken stock of the current state of microbial genomic biodiversity. Using publicly available genome … Berkeley National Laboratory, is committed to advancing genomics in support of DOE Office of Science Biological and …

… greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm allows users … with a nucleus). In part because of this evolutionary diversity, algal genomes can be incredibly complex and difficult to sequence and understand. A team of …

… the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help translating genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that …