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… Systems Engineering Group lead.   The group is responsible for developing and supporting applications that span the … and review, project and work order creation and management, automated sequence quality control and automation of microbial/metagenomic assemblies, portals that make data available to the public, and our institutional website. …

…   To understand virus-host dynamics, computation helps fill in what … cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a host, and not … be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like …

… Takemura, whose voice you’ll hear in a minute – we work for the US Department of Energy Joint Genome Institute, or … environment – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic … so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify …

… Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … focused on stable and accurate computational methods for reacting subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC …

… Input & sequencing Q(uestion): How much DNA is needed for “regular” vs the ultra-low input library creation … the PI. We currently use the ‘Base Modification Analysis’ tool within PacBio SMRT link, which works well for 6mA and … offer long-read metatranscriptome? (for e.g. full 16S, RNA virus, etc) A:  Long-read metatranscriptome / RNA …

… the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can affect how microbes cycle …

… and the bacteria and how the chemistry is going back and forth between them is part of what fascinates me about what … switched to chemical engineering and realizing that wasn’t for me and eventually, I got to chemistry. And as I was … massive problems just as much as it brings about massive data into really interesting ways to look at our systems. …