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Workforce Development & Education Outreach
… understanding of our role in advancing the energy and environmental genomics research frontier.  Learn more about the JGI's activities in this … Outreach Initiatives: … The JGI and UC Merced have had a long-standing internship partnership that started in the …
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Natural Prodcast Episode 23: Aaron Puri
… another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … in terms of their natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore … part of that. And so I decided to completely change gears and go and do a postdoc with a woman named Mary Lidstrom …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics and other … of genomes from uncultivated microbes (Nature 2019). Other projects in the group include the sequencing and comparative … of archaeal and bacterial type strains ( GEBA-type strains project ), the delineation of host-virus interactions, the …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … the fungal Tree of Life, including the 1000 Fungal Genomes Project, which aims to provide a reference genome for each …
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Corals in Hot Water Get Help From Their Microbes
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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into the natural … challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and … differences in plants and will accelerate gene discovery. BrachyPan on Phytozome (see Brachypodium Resources below) …
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How Maize Makes An Antibiotic Cocktail
… a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( … protect maize by fending off fungal and microbial infections. Scientists had assumed that maize synthesizes these … in the future. … Research was supported by grants from the USDA NIFA AFRI (1758976 to A.H. and E.S.) for …
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User Programs
Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED CLOSED ONGOING ONGOING Who Should Apply? Investigators with research projects that integrate the expertise and capabilities of … user facilities Investigators with DOE mission-relevant projects that call for expansive sequencing, synthetic …
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Natural Prodcast Episode 2: The Primer, Part 2
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, again. This is Dan, and you’re … to its mouth. We’ll have to put a picture of this on the website.  DAN: I guess looking at these is kind of like looking … in partnering with us, we want to hear from you! We have projects in genome sequencing, DNA synthesis, …
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David Goodstein
With a background in experimental and computational surface physics, Dr. Goodstein held positions at … in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative genomic … genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors. Nature …
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Understanding Wildfire Recovery, Starting in Soil
… a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees … DOE Office of Science National User Facilities in a single project. … This work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS …
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Ian Blaby
Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and … Grosjean et al ., A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in … 10, 2743-2769. 2015 Blaby et. al., The Chlamydomonas genome project: a decade on. Trends in plant science . 19: 10, …
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