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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … Research Division. As a postdoc, her research focused on stable and accurate computational methods for … Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics …
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics … profiles from diverse biological and environmental samples using advanced liquid chromatography mass spectrometry …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, … are crucial for advancing the bioeconomy, environmental sustainability, and improving bioenergy crops. … The Metabolomics Program is focused on understanding the critical roles of metabolites in …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… amount of biomass which could then be converted into sustainable biofuels . For its importance to the DOE mission, … make it a viable candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two … At the 2021 JGI Annual Meeting, David Lowry talked about a multi-year study his student conducted involving …
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in … home located in the heart of the Berkeley Lab main campus. On Monday, November 11, a week after they’d been  moved …
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JGI & KBase at PAG XXVII
… Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will … by and chat with representatives from KBase and the JGI about collaborative science opportunities. Learn how to … with the JGI Community Science Program, and how you can use the KBase system to accelerate your plant genomics …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the continental United … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month … a DIY Succulent Workshop and Plant Sale. All year, the JGI helps support finding solutions to clean energy and … Members from across Berkeley Lab gathered to learn more about planting and tending these shoots of their own. The …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last … plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a … current Data Restriction Policy requires that users know about the FY Funding Year, and the publication status in …
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Minimum Information about a Biosynthetic Gene cluster
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All Events
… The JGI is represented at conferences year round; find out where our researchers will be presenting next. Learn about upcoming user-focused webinars and workshops we're hosting. …
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