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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of … of human chromosome 19 . Nature. 428, 529–535 (2004). doi:10.1038/nature02399 Schmutz, J., Martin, J., Terry, A. et …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … to more sustainable energy production.  However, less than 10% of the microbes found in any environment can be grown in … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … first started out the natural product community was almost 100% bacterial. Only people working in mycotoxins worked … today who said “Oh, the ITS which we thought would identify to species”… he’s now found that some fungi have …
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Protocols
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THE Bioenergy Tree
… The US Department of Energy’s favorite tree is poplar. They’re the fastest growing trees in the Northern … remarkable genetic secrets that bring us closer to making poplar an economical and sustainable source of energy and …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … this collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom … cylindrus . At that time, they noted that the F. cylindrus genome encoded more proteins requiring zinc than non-polar …
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User Support
… a login at https://signon.jgi.doe.gov ). Once users are notified that their proposal has been accepted, the PMO will … of Institutional User Agreements Coordinating with JGI scientific and technical experts Project design with Principal … or DOE JGI staff to resolve issues, as needed Users are notified as projects reach specific milestones, either by …
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of … Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic …
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Katherine Louie
… analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … untargeted analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with other JGI … to assess metabolite turnover, DNA-SIP for helping identify active micro-organisms within complex communities, and …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this role he supervises the Genome Assembly, QA/QC, and User Support Analysis teams. … on computational and experimental approaches to study genome regulation in human and other vertebrate genomes. …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely associated … specific algae. The reference genome is cited in roughly 10% of all since-released publications on green algae. “The …
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