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Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological … The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic capabilities are …

The mission of the Joint Genome Institute is to serve the scientific … Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) … … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on …

Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … biosynthetic gene clusters (BGCs), advancing pathway analysis, optimization of cell- and cell free-based … computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, …

… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger … take to improve on the data side of things and sequencing analysis side of things to really start to be able to …

Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including … metadata about the samples, and the sample QC results. … Analysis and annotation of publicly available projects can … I request a culture/slant/DNA of an organism that has been sequenced at the JGI? … How do I check the current status of …

Below is a brief description of the process needed to prepare and ship samples for … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is completed. You can view the status of your …

… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene … would have really done a somewhat exhaustive chemical analysis of a bacterium that they’re interested in, usually …

… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … biological perspective, like what was this bacterium, and why did your group want to study it? Marnix Medema: You mean … different types of data, including expression data, use of metatranscriptomics, where you measure gene expression …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … data. The JGI Data Policy applies to research data and analysis products (referred to as “data” for the remainder … embargo starting at construct or strain delivery.  Detailed sequence information for constructs are made publicly …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … artificial Intelligent/machine learning approaches in data analysis and interpretation is creating new opportunities … al. (2017) Protein structure determination using metagenome sequence data. Science   355(6322):294-298 Paez-Espino D. et …

… (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome …

… then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right,  Dan: JGI did it in … working with you, Dan, on this one, and we said, “Well, why don’t we have you know, the bioinformaticians go against … Pacific Ocean, or in the bay, and be able to do chemical analysis, as well as transcript analysis. And what we’re …