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… as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … annotation based on chemical standards or computational approaches. Relative abundance of identified metabolites and …

… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene … or MAGs. So these are genomes that were assembled from metagenomic sequence, metagenomic sequence being taking a …

… user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …

… of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also … embargo starting at construct or strain delivery.  Detailed sequence information for constructs are made publicly …

… of their synthases so that we can start to use the DNA sequence to predict or just understand better the language … your interest in getting into natural products. DAN: Why are you here at SIMB? AARON PURI: Yeah. Thanks Jackie. … many different directions. And if somebody brings some new approach or some new way of thinking or technology, that’s …

… does some really exciting work there. And I thought, well, why don’t we try to go to Alaska and see what we can find … with any kind of gene cluster identification, doing it with sequence alone you have to have some kind of a template to … computational skills among biologists JGI CSP Proposal: Metagenomic mining of natural product diversity and …

… result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other … annotation, comparative analysis, and interpretation of sequence, metabolomics, and functional genomics data types …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural … there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …

The CSP New Investigator Call is for investigators and research initiatives new … will provide pilot data to assess feasibility of a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals …

And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … polyketide synthase and then P3. We still don’t know why 20 years later. JACKIE WINTER: It’s pretty amazing, … an interesting question. We’ve used a lot of different approaches. Some of them have been actinomycete-specific …

… fascinating. And I fell in love with actinomycetes. I loved approaching biology from a chemistry background. Dan Udwary: … Duncan: Yeah. I love actinomycetes. Dan Udwary: Tell us why. I mean, I know, but I think– Alison Takemura: I want to … of almost finished characterizing them. We’ve got genome sequences, which are just incredible. We’ve looked at the …

… at genomes and seeing where the really hard things to sequence were, and wondering what those … what those were … functional was these secondary metabolite pathways. So why was that? What is it about secondary metabolite pathways … the system. [ Go here to learn more about Cameron Currie’s metagenomics research, enabled in part by JGI’s Community …