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Data Policy
… to as “data” for the remainder of this policy) produced through all user projects accepted FY22 and later through the Community Science Program (CSP), Facilities … JGI Genome/Data Portal, MycoCosm, PhycoCosom, Phytozome, or IMG) and outside repositories (e.g. NCBI SRA or GenBank; …
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CSP Large Scale Call
… emphasis that are listed in the call and leverage the diversity of JGI technical and analytical capabilities. All … relevance and translatability to freshwater, coastal, or terrestrial systems. …
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Synthesis
… Plus: SynTrack and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… is that you could, therefore, expect a lot of chemical diversity. So many compounds will fulfill the same function. … You are not allowing any chemical diversification throughout this seven-enzyme pathway, because the only thing … through a very long period of time, because you are already on a stable niche that you want to colonize and …
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Publication Policy
… our policy on research data and analysis products produced through all user projects accepted FY22 and later. … our policy on research data and analysis products produced through all user projects accepted before FY22. … Auspice Statements Including appropriate tracking numbers is critical to facilitating the tracking of …
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Viral Genomics Group
… parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and computational exploration of uncultivated viral diversity, characterization of molecular mechanisms involved … is still limited. One key challenge is to complement diversity surveys ( Who is there? ) with activity …
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Natural Prodcast Episode 20: Brian Bachmann
… notes, which you can always find at naturalprodcast.com or through the JGI website at jgi.doe.gov . There’s a lot more … of thought with that. So some people are interested in cave microbial– people are interested in the more extreme … was less nutrients but enough that you had a lot of biodiversity. So we choose environments that are close enough …
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Natural Prodcast Episode 18: A CSP Primer
… product molecules obviously play a huge role in ecology through cell-cell communication, chemical warfare, and … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … proposals that are really multifaceted, that do request a diversity of the different capabilities that we have, that …
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Single Cell Research Group
… in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … Phylogenetic diversity estimates show that the gap between cultivated and … Woyke T ., Doud D. F. R., Schulz F. The trajectory of microbial single-cell sequencing. Nat Methods 14(11): …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… a third less than the normal amount that we get, which is already a fairly small number. We’re a very niche podcast. … And you need those a lot. You need those moments to get you through the day. So for me, it was if a door opens, take an … are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a subsection of that called …
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Natural Prodcast Episode 12: Nadine Ziemert
… around because it’s too late. They should be asleep already. But we’re not just here to talk about us. We have a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, … see. So it doesn’t seem to be a correlation between biodiversity in taxa and biodiversity in secondary metabolites. …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for … and advanced genomic analysis to explore the rich diversity of fungi and algae. These organisms play a … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and …
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