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… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, the Program …

… As a National User Facility, the JGI serves more than 2,500 users that predominately come … by industry. When Director Nigel Mouncey joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the JGI’s portfolio of user companies. Now the Department of …

… free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized analysis, the JGI also participates …

… including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: …

… of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … within those genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of microbial communities and ecosystem function.  The …

… to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … clusters. DAN UDWARY: Yeah, it certainly could. You can imagine lots of different approaches to sort of tackling this … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial …

… JGI Mission As a U.S. Department of Energy Office of Science … drive biotechnology and biomanufacturing innovation. The JGI contributes to this mission by enabling large-scale … crops, enhance biomass conversion efficiency, and discover microbial pathways for producing biofuels, biochemicals, and …

… The JGI’s Metabolomics Program works to uncover the roles of … exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity with gene …

… Access to the Molecular Foundry and use of JGI capabilities is free. The JGI supports remote users. Users conduct experiments in … then ship samples—such as DNA and RNA for sequencing—to JGI. Users are responsible for covering the costs of the … them as part of the user calls. Please refer to the JGI CMM call available here, which includes the capabilities …

… must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be required … required paperwork to your institution. (Samples of the JGI User Agreement , JGI User Agreement for Federal Agencies …

… gene clusters in your genome and outputs them in the visual HTML file that you can browse. Dan Udwary: Yeah. And I think … of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial …

… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s … development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … interactions, focusing on how environmental stress and microbial communities affect plant growth and productivity. …