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Partnerships: Myco-Ed
… 16 genomes released 20 members from 15 institutions 300+ students 800+ iNaturalist observations All MycoEd … through the links below. Naturalist Myco Ed Fungal Genomics Education Project MycoCosm MycoEd group page Protocols, teaching materials and bioinformatics …
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Microbial Program
… of bacteria and archaea in their natural environments using single cell approaches. This includes linking strain-level genetic variation to ecological niche adaptations.  Single cell sequencing approaches are also used for … and archaeal lineages to improve phylogenetic analysis, metagenomic annotations, and function distribution. These are …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in … and archaeal genomes that were created – these are Metagenome Associated Genomes, or MAGs. So these are genomes …
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Natural Prodcast Episode 7: Ben Shen
… on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … is always associated with toxicity, basically, killing cells. ALISON: Right, because they’re so reactive. BEN: … DAN: Yeah, I don’t think your lab is gonna tackle that single handedly, right? So, yeah, getting the community …
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Natural Prodcast Episode 14: Nigel Mouncey
… a great opportunity to learn more about JGI, hear some excellent talk from our users and from other invited guests, … in an obvious way. NIGEL MOUNCEY: We did a little bit of metagenome screening work and did find related clusters. But … and the stabilized isotope probing work that we’re doing, single cell work we’re doing. And using these together along …
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Natural Prodcast Episode 23: Aaron Puri
… predict or just understand better the language of microbial cell-cell communication. And he told us about his work in … bound to it and maybe there will be some a affinity tag or a fluorescent tag, and so you can use that as a … and they were able to synthesize the genes for every single one of those and put them in individual plasmids and …
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FICUS
… The FY23 FICUS Open Call for Proposals describes the resources … available from all the facilities participating in the FY23 call, introduces the Eco-FAB resource, and contains useful … Accessing Resources at Multiple DOE User Facilities with a Single Proposal describes the resources available from the …
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JGI Portals
… for amplifying the JGI’s impact. Data generated from a single investment will be reused for further science.  … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all … comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, …
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and spatial transcriptomics barcode-based …
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Natural Prodcast Episode 17: Cassandra Quave
… of ground – her book, bioprospecting vs biopiracy, early stage drug discovery in general, and a possible data-driven … has a book called The Plant Hunter and I’ve read all 400 pages of her life and I feel like I have a new friend that … and other natural product libraries, so not relying on single crystal X-ray diffraction, but looking actually at …
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JGI-TMF Critical Minerals and Materials Call
… The program seeks research proposals that integrate genomics with nanoscale science, accelerating discoveries …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic …
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