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Publication Policy
Proposal DOIs can be found at the top of the proposal info page on the JGI Genome Portal. You can navigate to the proposal info page using any of the below methods: Search the Genome … of Energy operated under Contract No. DE-AC02-05CH11231.” … All publications using JGI data produced under a …
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Micro-Scale Applications Group
… offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical … various microscopy techniques … Stable isotope probing metagenomics: … Single cell: … For further details, please …
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Natural Prodcast Episode 17: Cassandra Quave
… of ground – her book, bioprospecting vs biopiracy, early stage drug discovery in general, and a possible data-driven … has a book called The Plant Hunter and I’ve read all 400 pages of her life and I feel like I have a new friend that … then my lab pleaded mercy, and I said, OK, we’ll just do 2011 to present day. And it was still like 4,000 articles we …
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Disclaimer
U.S. Department of Energy under Contract No. DE-AC02-05CH11231. Accordingly, the U.S. Government retains a … JGI is not responsible for the contents of any off-site pages referenced. … Disclaimer of Liability … Disclaimer of …
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Natural Prodcast Episode 14: Nigel Mouncey
… in an obvious way. NIGEL MOUNCEY: We did a little bit of metagenome screening work and did find related clusters. But … in the environment and how we might be able to take advantage of those to improve plant health, for example.  DAN: … 30 to September 1st. The link is found all over JGI’s web pages.  DAN: And I will put it in the show notes along with …
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Primer and platform effects on 16S rRNA tag sequencing
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Microbial Program
… and archaeal lineages to improve phylogenetic analysis, metagenomic annotations, and function distribution. These are … capability of microbial communities based on their metagenome sequence, in the context of reference isolate … of plasmids automatically identified from genomes, metagenomes, and metatranscriptomes. It provides rich data …
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Environmental Genomics Group
… the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic … quantitative analysis strategy for stable isotope probing metagenomics . mSystems , e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  DOE JGI …
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Natural Prodcast Episode 15: Katherine Duncan
… exciting. And why chemistry is so far behind in that stage is it’s still really difficult to do natural products … structure information. You still need structure at this stage, and you still need to put that information into … It’s them that do it. They created the Wiki. They edit the pages. They add the content. They run the Twitter account. …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… this is Challis et al, Chemistry and Biology, 2000, 211-224, 7:3 And so, you can then make predictions about … if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; … and archaeal genomes that were created – these are Metagenome Associated Genomes, or MAGs. So these are genomes …
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The unique metabolism of SAR11 aquatic bacteria
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Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging
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