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Natural Prodcast Episode 5: Brad Moore
Natural Products conference, which took place last January 2020 in San Diego. San Diego, of course, is the “home turf” … working with him.  We talk about his father, the legendary marine natural products chemist, Richard Moore, and get into … marine natural product biosynthesis and at the beginning stages of connecting molecules and genes. And then genomics …
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Disclaimer
… of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. Accordingly, the U.S. Government retains a … JGI is not responsible for the contents of any off-site pages referenced. … Disclaimer of Liability … Disclaimer of …
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Primer and platform effects on 16S rRNA tag sequencing
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… were lost in other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  The … that enable organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of … … The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  …
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Natural Prodcast Episode 14: Nigel Mouncey
… screening platform where we’d look at 10,000, 15,000, 20,000 mutants a week. We started doing a whole bunch of … in an obvious way. NIGEL MOUNCEY: We did a little bit of metagenome screening work and did find related clusters. But … 30 to September 1st. The link is found all over JGI’s web pages.  DAN: And I will put it in the show notes along with …
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Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging
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JGI & KBase at PAG XXVII
Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE … on their work. BER Plant Genomic Science Workshop Agenda: 6:20 PM Overview and Joint Genome Institute Plant Program …
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CSP Large Scale Call
… feedstock crops or model plants. Projects targeting marine systems must clearly demonstrate relevance and …
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New Lineages of Life Group
… in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and … available at Google Scholar. Schulz, C Abergel, T Woyke (2022) Giant virus biology and diversity in the era of … in cell biology. 25 (6), 339-346 Schulz et al. (2015) Marine amoebae with cytoplasmic and perinuclear symbionts …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… found in Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you … if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; … come from all kinds of disparate environments. There’s some marine. There’s some soil samples. There’s human gut …
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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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Marine Microbe Contains Multitudes
… with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of … Lab), through the JGI Community Science Program . The metagenomes were also processed using the JGI-developed …
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