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Industry Engagement Program
… As a National User Facility, the JGI serves more than 2,500 users that predominately come … by industry. When Director Nigel Mouncey joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the JGI’s portfolio of user companies. Now the Department of …
Learn more
Micro-Scale Applications Group
… The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical … The JGI provides users access to cutting-edge cell sorting, DNA … additional functional insights into microbial genomes, the JGI now uses laser microdissection to selectively isolate …
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science … drive biotechnology and biomanufacturing innovation. The JGI contributes to this mission by enabling large-scale … resilience across critical sectors: Energy and bioproducts: JGI user research advances understanding of biological …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, … is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the … for a proposal, we encourage you to contact the relevant JGI  Science Program leads to discuss available options. …
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Natural Prodcast Episode 12: Nadine Ziemert
… was fascinating, I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot … of secondary metabolite pathways as viewed through metagenome studies, and what more JGI and others can do to …
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Natural Prodcast Episode 23: Aaron Puri
… natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore the chemistry of … bound to it and maybe there will be some a affinity tag or a fluorescent tag, and so you can use that as a … was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got …
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Publication Policy
… of this policy is to establish communication norms around JGI contributions, ensure that all contributors to a … of the journal in which the research is published. The JGI expects that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce …
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Natural Prodcast Episode 16: Marcy Balunas
… do when you’re exploring your systems. Because I think the JGI has a little bit of a different approach. We don’t … That is one of the really big frontiers for the next stage of natural product drug discovery I think. Or even … a long time.  MARCY: It will. Are you going to solve it at JGI?  DAN: No.  [LAUGHING]  ALISON: Don’t shortchange JGI!  …
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Frequently Asked Questions: Project Management
… The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online … (WIP) interface.    For commonly asked questions about JGI’s proposal calls and proposal submission, as well as … The “User” signing the JGI User Agreement will be an authorized representative from …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … mentor students, teaching classes, and really setting the stage for what I really wanted to do and getting to– so I … the rest of the archaea and fungal genomes and then work on metagenomes. So yeah. So we’ve taken every public sequence …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … and archaeal genomes that were created – these are Metagenome Associated Genomes, or MAGs. So these are genomes … , for which Dan conducted genome mining on thousands of metagenome-derived genomes. Check out …
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User Advisory Committees
… the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley … stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in this Code of Conduct. … The UEC represents the JGI user community and is responsible for providing input …
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