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Partnerships: Adopt-A-Genome
… that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. … curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, conveys … with over 20 more in draft Efforts in ongoing curriculum development and adoption of classroom modules Testimonials: …
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Mission
… in studies of complex biological and environmental systems. We optimize our service to the community through … DNA design and synthesis, metabolomics and computational analysis that enable systems-based scientific approaches to … plastics. This drives the DOE’s focus on developing lignocellulosic biomass as a clean, renewable and sustainable …
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Natural Prodcast Episode 2: The Primer, Part 2
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, again. This is Dan, and … that – I want to say like lipid bilayer, you know, in the cell.  DAN: It depends on lifestyle. So there are lots of … a lot of antibiotics will target specific parts of a cell wall. And so if you weaken a cell wall, then the bacteria …
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DNA Synthesis Program
… the design and synthesis of complex genetic pathways and biosystems. It The program fosters collaboration with U.S. and … bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 fixation, redox reactions, and … IMG/M system serves as a community resource for comparative analysis and annotation of all publicly available genomes …
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Products
… cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … analysis Relative abundance profiling of non-polar (e.g. secondary metabolites, lipids, etc) metabolites using … Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of a …
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IMG Group
… workflow, and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and … of facilitating omics-based scientific investigations. Development and maintenance of the Integrated Microbial … ANI is used to ascertain the species specificity of single cells and genomes extracted from metagenomes, and also as a …
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Natural Prodcast Episode 11: Marnix Medema
… about natural products and the science and scientists of secondary metabolism. Hey there, and welcome back to Natural … and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or … sometimes correlated or anti correlated, also with other cellular functions in the same and as it was other bacteria …
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CSP New Investigator Call
… accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s …
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Natural Prodcast Episode 7: Ben Shen
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hello, and welcome back for … is always associated with toxicity, basically, killing cells. ALISON: Right, because they’re so reactive. BEN: … to have an index. You have to have the computer-searching systems. So one of the enabling technologies we wanted to do …
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Natural Prodcast Episode 12: Nadine Ziemert
… about natural products and the science and scientists of secondary metabolism. Welcome back. This will be episode 12 … take to improve on the data side of things and sequencing analysis side of things to really start to be able to … UDWARY: Yeah, that’s always a problem in academic software development. NADINE ZIEMERT: Yeah. And I think, otherwise, a …
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Natural Prodcast Episode 20: Brian Bachmann
… and using engineered biosynthetic pathways and enzyme systems to do synthetic analoging of some really complex … And I’m also dying to talk in more detail about the JGI Secondary Metabolism Collaboratory , which is the big huge … of what’s out there so that we can do more comparative analysis and maybe– I don’t know– start to put some of these …
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FICUS-NERSC/KBASE
Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological …
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