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Natural Prodcast Episode 13: Francisco Barona Goméz
… him about more recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and … to everything, but I always thought the conceptual framework was useful, at least. Certainly, I can see many, … often end up realizing that what is defined by the KEGG [database], for example, is not enough even there. So it’s …
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Environmental Genomics Group
Biotechnology . 2020 Nov 9. Vyshenska, Dariia et al. (2023)  A standardized quantitative analysis strategy for …
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Tour the IGB
… floor, click and drag to look around the space, use the graphic rings to move about the space, and your pointing … the science depicted, click here . <span data-mce-type="bookmark" style="display: inline-block; …
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Natural Prodcast Episode 24: Jackie Winter and SMC
SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … GC-content, and other things. We don’t, say, have geographic information of wherever the thing was sampled from … Metabolites Collaboratory SMC Workshop Materials from the 2023 JGI Annual Meeting Using the SMC Website API Endpoints …
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Operating Expenses
FY2023 Spending Profile The JGI is funded primarily by the DOE …
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JGI Portals
Our data platforms are a key resource for the broader scientific … and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … The JGI Genome Portal provides unified access to all JGI genomic databases and analytical …
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Natural Prodcast Episode 11: Marnix Medema
… center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade … efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells … been great fun to actually work with so many people on this framework. And I think this is really– I personally like …
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Webinars on Offerings & Capabilities
… . You can find additional webinars covering how to use our data portals here.  … … Shining a Light: Advanced Photon …
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Single Cell Research Group
… high value to establish models and hypotheses, experimental data is critical to further test such hypotheses. In …
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Natural Prodcast Episode 9: Roger Linington
… or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … well. And then also Canada.  ROGER:  Yeah, there’s been geographic diversity, I’d say perhaps more interestingly, … lot in the past. This sort of idea of, “there’s a lot of data out there: let’s put it together”. So you have – at …
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Natural Prodcast Episode 23: Aaron Puri
… thing I’ve learned is that when JGI gives you a ton of data you better have someone really smart to be able to … here is a lot of natural products labs look at maybe geographical diversity to try to find new natural products and … genes and an unusual acyl-homoserine lactone signal . mBio. 2023 Aug 31;14(4):e0101023. doi: 10.1128/mbio.01010-23. …
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IMG Group
… (meta)genomic, (meta)transcriptomic, and functional genomic data and serving them to users via the Integrated Microbial … Genomes group is focused on:  Developing state-of-the-art data processing and analysis pipelines for the interpretation of microbiome omics data Developing forward-looking strategies for the …
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