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… and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took a little break, but I’m … off today with my interview with the Director of the Joint Genome Institute and head of the Secondary Metabolites … had a really beautiful fermentation development lab and research lab all the way from Ambr250 fermenters to 2 liter …

… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … in the sense that I was doing all these manual BLAST searches and HMMER searches trying to find these gene … Marnix and his collaborators have a fantastic set of software tools for exploring secondary metabolite biosynthetic …

… How To Create an Annotated GenBank File There are several easy-to-use open source tools for converting DNA …

… to help advance their science by generating data in three overarching categories: DNA Sequencing , Biodesign and Metabolomics .  Many users rely on a multifaceted combination of genomic, …

… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … 1) Review JGI sample QC requirements and protocols Obtaining … material is one of the greatest predictors of a successful sequencing project. It is imperative that users properly …

… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … carbon cycling, biodegradation and biogeochemistry. This research helps translate their genomic potential into …

… users to perform state-of-the-art functional genomics research and to help them translate genomic information into … ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable … All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance , …

…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative Genomics … AI-centric genomic science user facility located at Lawrence Berkeley National Laboratory ( Berkeley Lab ), and …

… Columbia, Canada. This is the last of the podcasts we recorded in my hotel room at SIMB, or the Society for … splitting his time between Bill Gerwick’s lab and doing research in Panama through support from the ICBG training … products field as it relates to structure elucidation and genome mining, and how we might start to better connect …

… DAN: You’re listening to the US Department of Energy Joint Genome … who all have really interesting stories and very cool research. I hope you’ll stick around. But, for now, here’s … pulled from the soil, maybe it’s, you know, we talked about sponges, go pull a sponge or extract some tree bark. And so …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … that are known to be sources of secondary metabolites, like sponges were a really common source for people to try to … from the first episode . You can go to part 3 here . You can find the podcast on  Apple ,  Google ,  Spotify …

… establish communication norms around JGI contributions, ensure that all contributors to a research project are appropriately recognized and credited for … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …