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… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted …

… algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … compounds. To support users, our efforts include developing computational tools for predicting biosynthetic gene clusters (BGCs), …

To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data … to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development of tools and infrastructure for microbiome data science, and …

… inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly … available genomes from three domains of life. It provides tools for analyzing the functional capability of microbial …

… growth of DNA sequencing data, coupled with recent computational technology advances in management, processing … analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … Environmental Sample Archives, Applying JGI and EMSL Omics Tools introduces the NEON resource, a network of field …

The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers exploring how to … group and focused on new technologies and optimizing tools — including strain engineering — to make them more … Informatics Group : a team that develops data science tools for workflow management and novel automations for DNA …

… has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further … plant and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy Research … (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …

I have the feeling that once we have the synthetic biology tools, we finally are in a position to exploit secondary … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great … large-scale comparisons of biosynthetic gene clusters: “ A computational framework to explore large-scale biosynthetic …

… components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, … Developing forward-looking strategies for the deployment of computational workflows at peta- and exa- scales on … of genome and metagenome datasets in a comprehensive comparative context. The IMG data warehouse integrates …

… restricted niche. And they do need broad host-range genetic tools so it’s more complicated than working with something … up now with JGI is we identified using some different computational methods a bunch of different syntheses that … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …