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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to …
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Publications
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … amino acid out of solution and stick another amino acid or multiple other amino acids onto it to create a small …
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VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
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Data Policy
… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … A primary purpose of this project is to bring educators from …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural … work in the Metagenome Program uses several experimental approaches to assess microbial activity across ecosystems.  … The Metagenome Program focuses on the high-throughput sequencing of …
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Natural Prodcast Episode 16: Marcy Balunas
… DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … garden ant as well as the American honeybee. And so I have multiple opinions which I’m never short of but. In terms of …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of … usually very beneficial to the field. It’s very, very, very multidisciplinary, is the usual term for that. So yeah. … term quorum sensing. And so it was really cool to have an expert on campus. And so I emailed him and eventually got …
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JGI Advisory Committees Code of Conduct
… Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core … advisory committee, you serve as ambassadors for the JGI guided by these Stewardship principles referred to above. …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once … it’s unclear why this is so rarely detected.” Developing Approaches for Reconciling “Real” Big Data For the team, the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity … symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants … Plant microbiomes hold the amazing ability to influence plant …
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