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Viral Genomics Group
… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and computational exploration of uncultivated viral diversity, characterization of …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major …
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … about in this interview are the RiPPs, which stands for “Ribosomally synthesized and Post-translationally modified … so they’re secondary metabolite peptides. And there are two ways that nature does this. The more well-known …
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Plant Program
… to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … more work, but it also is only going to work if you have validation of the results. And we should probably get …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … Moving forward, I’m hoping to get a new one out every two weeks. This time, we’ve got a great interview with Ben … I’m very happy to talk to you. And so this is the third international meeting on natural products, but as a new, I call …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … scientific audience whereas now I’m sitting here with two people who know way more about natural products than I … of genes. It was actually originally predicted to be a nonribosomal peptide synthetase but then flanked by these two …
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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … be proposing a larger project that requires the work of two or more DOE user science facilities. That’s kind of out … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … utilize a broad range of the capabilities across at least two of the facilities, and generate datasets beyond what … provides customized analysis, the JGI also participates in publication of results. …
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Sequencing Technologies & Products
… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This includes scaling the technologies and enabling state-of-the-art sample processing and sequencing capabilities. … An assay used for profiling transcription factor binding sites across entire …
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