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… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … and he has a project with the JGI to synthesize the genes for and explore the chemistry of quorum sensing … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …

The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … the capabilities across at least two of the facilities, and generate datasets beyond what each of these facilities could … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

… welcome, Nadine. ALISON TAKEMURA: What is the big picture for you in your lab? NADINE ZIEMERT: Big picture, I want to … all these very, very related genomes, right – on their 16S level, they’re almost identical! But seeing all these … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

… genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … microbiome field, many people had just been looking at like 16S taxonomic profiles of these communities looking at who … we used an early version of BiG-SCAPE. And then Victor did QPCRs to figure out a number of gene clusters that were …

… please include the following items: … Sequence files for all constructs should be emailed to  Miranda … Manager . … How To Create an Annotated GenBank File There are several easy-to-use open source tools for converting DNA … written by M. Wayne Davis or commercial options include SnapGene . … How To Use ApE To save your ApE file as a Genbank …

… it’s a little hard to find in print, but we live in the information age and the ebook version is available at most … And so if you can picture, some really simple chemical reactions where you’re just putting two units together in a … and actually get to the DNA sequence – sequences for the genes that code for the proteins that produce secondary …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … energy and ecosystem management. The program aims to generate high-quality genomic datasets, particularly for …

… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot … my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for a couple … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …

… analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … include exploration of the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … After I got my undergraduate degree, which was in general biology, I joined the Peace Corps. And when I was … do you check if they’re there? Like we always talk about 16S for bacteria, but we don’t talk about it so easily with …

Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … we study lignocellulose decomposition, CO2 fixation, redox reactions, and plant metabolite biosynthesis, synthesizing …