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… The User Support Analysis group provides computational analysis for new … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …

… The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical …

… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our … capabilities and functional genomics, scaling capacity through end-to-end automation — and further advancing … large-scale liquid handling automation, and sequence analysis. …

… that the squid is one– is we work on a lot of host-microbe symbiosis at this point. But the squid is probably the most … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … could go down that route.  DAN: So the sun pierces down through the ice pretty well, is that right?  MARCY: It …

… With collaborative user projects, the JGI’s Plant Program delves into … to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products …

… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the … provides customized analysis, the JGI also participates in publication of results. …

… Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, … take to improve on the data side of things and sequencing analysis side of things to really start to be able to … Episode Transcript … the evolution of secondary metabolite pathways as viewed through metagenome studies, and what more JGI and others can …

… the same sorts of things. And then, bacteria often live in symbiosis with plants and might actually be producing … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … learning tool that tries to look at patterns of Pfams through a genome and predict where regions of secondary …

… for researchers to request the capabilities and expertise of both the Joint Genome Institute and the Molecular Foundry … accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the … provides customized analysis, the JGI also participates in publication of results. Go here for additionial information, …

… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … between Bill Gerwick’s lab and doing research in Panama through support from the ICBG training program, which stands … of system-wide problems. And it’s not just constitutional analysis as a problem, we need corresponding improvements in …