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FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … available from all the facilities participating in the FY25 call, introduces the resources available from the …
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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … applications. The program provides high-quality, large-scale genomic data to advance microbial research that … applications. By expanding our knowledge of microbial functions and interactions, the Microbial Program supports …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the … of fantastic science, mainly in marine natural products structure elucidation, and he trained some of the greats in …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… for people, but also those molecules that mediate a well functioning ecosystem and environment and earth. So yeah, … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … a community effort of putting together the natural product structures that are known. I forget how many structures are …
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Microbiome Data Science Team
… of host-virus interactions, the exploration of the functional dark matter as well as the development of novel … Science  356: 82-85 Ovchinnikov S. et al. (2017) Protein structure determination using metagenome sequence data. … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … strains. This approach allows for the identification of key functional traits that have direct applications in bioenergy … the environment. … Genomic Encyclopedia of Fungi focuses on aspects of plant feedstock health, biorefinery mechanisms …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … In particular during an era of ‘homology creep’, function prediction as purely based on annotation may not be … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 16: Marcy Balunas
… know that that’s ever necessarily like a good description of anyone because chemistry means a lot, especially when … bobtail squid has two organs that solely house– whose sole function is to house bacterial associates. And so the one … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much …
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Natural Prodcast Episode 22: Alison Narayan
Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … attraction to natural products was dual, the beauty of the structures and also the challenge and thinking about making … sentence. I think that sometimes, we think about enzyme function is we think about the natural function versus can …
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CSP Large Scale Call
… on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based approaches to unravel functional capabilities of plants, microbes and microbial … .  While applications will be accepted that address any aspect of these mission areas, priority will be given to …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … with an active JGI User Agreement older than January 2024 will be required to execute a 2024 version .  The …
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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … By understanding how microbes contribute to ecosystem functions, the Program helps drive innovations that could … effort aimed to develop standards, processes, and infrastructure for an integrated microbiome data ecosystem. … …
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