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… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … genomics to better understand the plant-associated terrestrial world. Research Team    … Plant microbiomes hold … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

Our lab is using mass spectrometry based metabolite profiling to provide direct biochemical datasets to improve our understanding of microbial metabolism. Of particular interest is …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … Adopt-a-Genome has:  11 CSU educators working with the JGI 120 genomes claimed (or about one per student) Seven …

… by the Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … high-throughput sequencing, DNA design and synthesis, metabolomics and computational analysis that enable … to contaminants such as heavy metals or radionuclides in soils, freshwater, coastal sediments (coastal here defined  …

The Facilities Integrating Collaborations for User Science (FICUS) call … appropriate. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

… off through these areas. And you can do– with a teaspoon of soil from outside, you maybe have to do a 10,000-fold … well plates. And we can use our fancy multiplexed activity metabolomics method to tell us what’s active, which peak is … to merge with the synthetic biology community, with the metabolic engineering community because the skill sets are …

The Facilities Integrating Collaborations for User Science (FICUS) … is required. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …

… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … permission for their planned work.   … For sequencing or metabolomics projects: data are subject to a  one-year …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … synthesis and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product offerings, … Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to …

… “Microbes underpin so much of what we see on earth in terms of nutrient … have many questions about the microbial communities deep underground, and before the pandemic, they took the JGI on a … at: the role viral infection may play in other natural ecosystems. The video complements a recently published paper …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … disparate environments. There’s some marine. There’s some soil samples. There’s human gut samples. There’s lots and … in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural products in plants, fungi, and …

… to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the … The program’s fungal genomics research explores new metabolic processes and enzymes that can be applied in … improve understanding of how fungi and algae contribute to ecosystems and industries. The program also explores …