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The  Open Green Genomes (OGG) project seeks to develop comparative high quality genomes and annotations across the … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of … high-quality de novo assemblies for very large-scale single genomes, based on the JGI assembly tool meraculous. …

… types) (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from … Bowers RM, et al. (2017) Minimum information about a single amplified genome (MISAG) and a metagenome-assembled … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … is always associated with toxicity, basically, killing cells. ALISON: Right, because they’re so reactive. BEN: … DAN: Yeah, I don’t think your lab is gonna tackle that single handedly, right? So, yeah, getting the community …

… such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and … in metagenomic sequencing, assembly and binning have enabled reconstruction of complete or near-complete … The JGI supports microbiome data science by enabling comparative genomics and metagenomics analysis through the …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … Accessing Resources at Multiple DOE User Facilities with a Single Proposal describes the resources available from the …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … into bioenergy and bioproducts. The program’s fungal genomics research explores new metabolic processes and … provides data access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to …

ANI is used to ascertain the species specificity of single cells and genomes extracted from metagenomes, and also as a … of genome and metagenome datasets in a comprehensive comparative context. The IMG data warehouse integrates …

Celebrating 25 years of genomics research 2022 marked the JGI’s … to advancing the frontiers of environmental and energy genomics. The two-story mural at the Integrative Genomics …

Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire … bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 fixation, redox reactions, and … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …

… come, though, too when you start talking about going after single gene clusters. BRIAN BACHMANN: That’s right. JACKIE … mammalian systems. But it allows us to assay on a single cell level against cell lines and against primary cells … a good catalog of what’s out there so that we can do more comparative analysis and maybe– I don’t know– start to put …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … way – the RiPP way, is to make a protein using the normal cellular way of making proteins, with a ribosome. Then, some … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …

… quantities of DNA derived from individual environmental cells. The proof of principle study built off earlier … and finished genome derived from an uncultured bacterial single cell – a symbiont of the green sharpshooter. In 2012, … in carbon fixation in the dark ocean. Combining single cell genomics and synthetic biology, a team studying microbial …