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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched … call . This represents a unique opportunity for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  … Access to the Molecular Foundry and use of JGI capabilities is free. The JGI supports remote users. …
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Validating genome-wide CRISPR-Cas9 function improves screening in the oleaginous yeast Yarrowia lipolytica
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … genome mining over the years, and we talk about a new publication out of JGI in Nature Biotechnology , for which …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, which is not ideal for me keeping myself on … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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FICUS
… call represents a unique opportunity for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. … for the annual FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly describing the …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY … 50% reduced capacity for Q3 due to Clarity LIMS transition. **Includes Illumina HiSeq, Illumina NextSeq, …
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Draft genome sequence of Yarrowia lipolytica NRRL Y-64008, an oleaginous yeast capable of growing on lignocellulosic hydrolysates.
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting …
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Partnerships: Myco-Ed
… Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students and professors in laboratory techniques … Beyond providing a scalable solution for production of high-quality fungal reference genomes, this program is an …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is … gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is … automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign platform enables …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … . And that got me really interested in microbial gene regulation and some pathways. And I thought I’d take an … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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