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Natural Prodcast Episode 10: A Primer on Genome Mining
UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … That could be an origin story. DAN UDWARY: That’s really reaching. No, antiSMASH is the Antibiotics and Secondary …
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Reconstructing each cell's genome within complex microbial communities—dream or reality?
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Natural Prodcast Episode 11: Marnix Medema
Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … that had the protein domain. And then for every clade within that phylogeny it made its own Soc? Pfam model, so … a gene cluster into BiG-SLiCE, BiG-SLiCE identifies for each gene that belongs to an important enzyme family to …
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Microbiome Data Science Team
… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the Group Lead …
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FICUS
… applications will focus on high-risk/high-payoff proposals within the focused topic areas that can be completed on an … two of the facilities, and generate datasets beyond what each of these facilities could generate by itself.   … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …
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Natural Prodcast Episode 23: Aaron Puri
And then what actually brought me to natural products was reaching back into that love of the intersection of chemistry … really, really important part of their ecology, are these cells communicating with one another. What can you tell us … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Plant-Microbial Interactions Group
We are using these methods to understand how plant cells respond to low nutrient conditions (low nitrogen or … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, please reach out to …
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Natural Prodcast Episode 14: Nigel Mouncey
… off today with my interview with the Director of the Joint Genome Institute and head of the Secondary Metabolites … bringing these two businesses together. And so I’d reached this time when I thought, well, it’s probably time to … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … So you are at the Scripps Research Institute. We’ve known each other for a while, you are definitely an expert in … is always associated with toxicity, basically, killing cells. ALISON: Right, because they’re so reactive. BEN: …
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Natural Prodcast Episode 18: A CSP Primer
Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … also on the website, we have a lot of good information on each call, what are the deadlines for our large call. We …
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DNA Synthesis Program
… biology, the program enables the design and synthesis of complex genetic pathways and biosystems. It The program … the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and … … Synthesis Capabilities & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … …
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Plant Program
… improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of genes within and across species.  … HipMer is a high-performance …
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