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Data Policy & Support
… Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI …
Learn more
Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … The Microbial Program focuses on using advanced sequencing technologies to explore microbial …
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Analyze Data
… The JGI supports the entire data life cycle — from experimental design to reuse. Armed with the high-quality data we generate, tools like artificial intelligence can … span domains. We also work with our partners to build infrastructure in support of new analysis techniques.  …
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FICUS
… across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s … provides customized analysis, the JGI also participates in publication of results. …
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Publications
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… itself medicine, but the coding within the DNA codes for proteins that do the chemistry that put molecules together … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … a community effort of putting together the natural product structures that are known. I forget how many structures are …
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How To Use Our Systems
… have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data life cycle, and embeds metadata and its curation in our …
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Natural Prodcast Episode 7: Ben Shen
… a class of natural product with a really cool chemical structure. We try to explain it, but it’s chemistry, so I … very first compound was introduced in the early 90s and by using a polymer as a delivery mechanism. So, the polymer … So, we were essentially using brute force to isolate the proteins. The proteins are the biological version of the …
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Natural Prodcast Episode 22: Alison Narayan
… work as exploring and exploiting biocatalysts – that is, using enzymes to do chemical reactions. Obviously, in my … attraction to natural products was dual, the beauty of the structures and also the challenge and thinking about making … do engineering to improve the physical properties of a protein and make it easier to work with. But sometimes, what …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all …
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Natural Prodcast Episode 9: Roger Linington
… So, I’ve always known Roger as an expert in natural product structure elucidation, but more recently, he’s been leading … from drug discovery in every possible disease target area, using an enormous array of different isolation strategies … And that’s been followed by developments in pulse sequences and improvements in the ways in which you acquire …
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