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Plant Program User Advisory Committee
… The Plant Program Advisory Committee is chartered to offer … on the effective management and strategic objectives of the plant program. The committee serves as the program's key …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help … Fungal Genomes project can enable studies of plant root microbiome and other microbiomes by providing reference … Programme: Deconstruction and Reconstruction of the Plant Microbiota (SPP DECRyPT 2125)’ and the Cluster of …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We … This process enables our users to explore the genetic makeup of microbial communities, shedding light on …
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Natural Prodcast Episode 2: The Primer, Part 2
… and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have … the sponges or other things. And we know lots more about microbiomes and symbionts that live with other organisms, … or secondary metabolism, has been … not dominated by, but driven by drug discovery. We know that many natural product …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at … as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.    … through analyzing and harnessing genomic information from plants, fungi, algae, non-medical microbes, microbial …
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Natural Prodcast Episode 11: Marnix Medema
… in the end because later I brought all those tools to Warp Drive and we used them for a while before they switched to … especially across species that might be a little bit more genetically distant where the BGCs may have drifted but they … called “disease suppression”, where the microbiome of a plant, so the bacteria living on and inside the roots are …
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Secondary Metabolites Program
… of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for … growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and communication. … metabolites produced by bacteria, fungi, algae and plants. These compounds are key to organisms' interactions …
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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning … coding potential to find novel functions that may impact microbiome structure and biogeochemical cycles. Research …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to … large-scale genomic data to advance microbial research that drives sustainable solutions in energy, agriculture and … single cell approaches. This includes linking strain-level genetic variation to ecological niche adaptations.  Single …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of switchgrass and is a key component in providing genetic variation available for selection to improve biofuel yield … could be generating these observed patterns. As many other plant species have natural cytotype variation, we also hoped … More genome copies in switchgrass leads to increased climate flexibility …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such … that are from candidate phyla, major branches in the phylogenetic tree without cultivated representatives. The “Great …
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