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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … So that’s– so that could be an example of convergent evolution, but just speculating there. But it’s interesting … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … Biotechnol 35(8): 725-731 (2017). Woyke T . & Rubin E.M. Evolution. Searching for new branches on the tree of life. … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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Secondary Metabolites Program
Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and … to tap into the largely unexplored biochemical diversity within secondary metabolites, expanding their potential …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … do some sort of slightly novel chemistry. That’s just how evolution works. So if secondary metabolism is really …
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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … lineages, and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Viral Genomics Group
… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host dynamics in … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the … cycles, as well as atmospheric particle formation and evolution.  Data from such studies is expected to advance a … sediments (coastal here defined  by NOAA as the area within 185 km/100 nautical miles of land), and the …
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FICUS Overview
… to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National User Facilities into … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … repositories until the earliest of three points:  (1) publication of the data (including, but not limited to, …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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User Executive Committee Charter
… users and their science including technical capabilities offered, proposal review procedures, and the annual user … community and promotes communication and collaboration within the user community. UEC responsibilities include: … recommendations to the JGI regarding technical capabilities offered, including areas where more or less capacity is …
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes advanced tools, including deep … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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