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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride …
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FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …
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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and biogeochemistry. This research helps translate their genomic potential into practical applications, including … sampling of fungi, laboratory analysis and genomics data exploration. … The Mycocosm web portal provides data …
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Products
Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … based on feasibility and scientific merit.  Arizona Genomics Institute will produce HMW DNA needed for these … of transcription factor binding sites. TF binding sites and motifs Depends on project … * Cycle times listed above are …
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FICUS Overview
… to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Partnerships: Myco-Ed
Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … train students and professors in laboratory techniques and data analyses compile original data for improving fungal genomic resources empower students through isolation and …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific … community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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Environmental Genomics Group
… the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … I think GTDB also started that. But I think taxonomy and genomic data are still kind of a mess. DAN UDWARY: Yeah, …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, …
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User Support
The JGI Project Management Office carries out a number of activities to facilitate … Project Manager will facilitate project execution by: Metadata verification and coordination with IMG , GOLD and … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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The parallelism motifs of genomic data analysis
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