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… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, …

… Microbes drive critical ecosystem functions and affect global nutrient cycling, … group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … involves both experimental and computational exploration of uncultivated viral diversity, characterization of …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … but also those molecules that mediate a well functioning ecosystem and environment and earth. So yeah, it’s like … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …

… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular level. Integrating genomics with … Program is focused on understanding the critical roles of metabolites in living systems, particularly as they …

… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This … cell genomics, biodesign, and metabolomics capabilities.    Overview of sequencing products The JGI operates highly … An assay used for profiling transcription factor binding sites across entire …

… functional genome annotation, improves understanding of the role small molecules play in diverse biological … sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform … in combination with advanced computational analysis.   Overview of metabolomics products At JGI, in-depth molecular …

… and novel automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign platform enables … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, … Software Engineers in the Synthetic Biology Informatics Group …

… You can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products categorized by Science Program.  … The majority of JGI projects come from the user community. Find out about … proposal calls and proposal submission, as well as examples of approved proposals, please visit the Proposals FAQ .  …

… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … like a nice summer day in Seattle I think this was like 2013 or 2014. And antiSMASH — I know you’ve interviewed Marnix … gas. And oftentimes people’s mind go right to anaerobic ecosystems. But these are actually– so methane– biologically …

… One of the JGI’s key assets is our user community, comprising a … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … and connect our data to the broader biological data ecosystem. Our community of data-downloading users spans …

… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

… Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to … our continuing contributions to advancing the research ecosystem. Their trust hinges on sustaining our record of …