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The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our … a combination of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity …

… … Dan Udwary: You’re listening to the Department of Energy … and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or … primer episode, we talked about genome mining through some metagenome associated genomes. And yes, antiSMASH is …

DAN UDWARY: You’re listening to the Department of Energy … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; …

… … DAN UDWARY: It’s been a while, but Natural Prodcast is back … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … is over, the data gets released on our portals, such as IMGM. But we also then push the data to GenBank. So the raw …

JGI Mission As a U.S. Department of Energy Office of Science user … DNA design and synthesis, metabolomics and computational analysis that enable systems-based scientific approaches to … scientific discovery. Projects focused on organisms for comparative purposes, on model systems for microbe-microbe …

The JGI Project Management Office carries out a number of activities to … has completed, your Project Manager will initiate analysis with the appropriate JGI analysis team. During this … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …

The Facilities Integrating Collaborations for User Science … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, …

To expand access to integrated data, improve tools and … modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to enable users to … scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI …

… … DAN UDWARY: You’re listening to the Department of Energy … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot …

The JGI’s DNA Synthesis Program supports a wide range of projects, from … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly available genomes …

… … Information on Software Looking for information on our software, including BBTools ? Click …