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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group … the power of data science in tackling grand challenges in Biology, with a special focus on microbiome research.  These …
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Plant Program User Advisory Committee
… The Plant Program Advisory Committee is chartered to offer … on the effective management and strategic objectives of the plant program. The committee serves as the program's key …
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Natural Prodcast Episode 17: Cassandra Quave
… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … So I was always an outdoorsy kid – I was often found in a tree or covered in dirt playing with my dog in the yard. But … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Data Ecosystem
… EMSL and the Protein Data Bank enables predictive ecosystem biology. The collaborations present exciting possibilities … KBase is a critical partner in enabling systems biology analyses, such as metabolic modeling, that go well … DOE System Biology Knowledgebase …
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Metabolomics Program
… and ecosystems at the molecular level. Integrating genomics with metabolomics fuels the discovery  of novel … of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With advanced mass … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome …
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Fungal & Algal Program
… functioning — particularly in their roles associated with plants (mycorrhizae, endophytes, growth promoters, or … into bioenergy and bioproducts. The program’s fungal genomics research explores new metabolic processes and … The program seeks to expand our understanding of algal biology using genomics and multi-omics by working with …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride …
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Who We Are
… of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at … with partner organizations such as the DOE Systems Biology Knowledgebase and the National Microbiome Data … HudsonAlpha Institute for Biotechnology , and the Arizona Genomics Institute. We are located in the Integrative …
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Biodesign
… applications.  The team has three subgroups: Synthetic Biology Lab : a user science group dedicated to user project … engineering — to make them more user accessible Synthetic Biology Informatics Group : a team that develops data … Software Engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain …
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Natural Prodcast Episode 1: The Primer, Part 1
… that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe … the special, natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. … But where taxol comes from is, from the bark of the yew tree, is where it was originally discovered. And so that …
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Mission
… and manufacturing. Genomic science lies at the heart of biology, providing the foundational knowledge to understand, … and Materials (CMM): Genomic studies of microbial and plant metabolism reveal biological routes to recover, reuse, … Enhancing agriculture: JGI users explore beneficial plant–microbe interactions and nutrient cycling to enhance …
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FICUS
… provides customized analysis, the JGI also participates in publication of results. … Ridge National Laboratory  Center for Structural Molecular Biology . … the spatial, temporal, taxonomic (environmental, microbial, plants, invertebrate, and vertebrate), and thematic scope of …
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