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The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in …

… and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or … and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells us about forthcoming … functions of the gene clusters in their community context. So we want to develop new algorithms that are able …

IMG/M system serves as a community resource for comparative analysis and annotation of all publicly available genomes … from three domains of life, in a uniquely integrated context. IMG/M provides tools for analyzing the functional … host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information. … The IMG/VR database …

Project design with Principal Investigator Providing a general orientation to JGI systems to Investigators … has completed, your Project Manager will initiate analysis with the appropriate JGI analysis team. During this … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …

The Facilities Integrating Collaborations for User Science (FICUS) … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …

Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … IMG/M system serves as a community resource for comparative analysis and annotation of all publicly available genomes … from three domains of life, in a uniquely integrated context.  … The MycoCosm web portal provides data access, …

ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … would have really done a somewhat exhaustive chemical analysis of a bacterium that they’re interested in, usually …

… bit more into fungi and learning the differences of all the genetic differences and then expanded on on that knowledge … back up and sort of give a little bit of a historical context. JGI, for many years, has been doing work in … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …

… the capabilities across at least two of the facilities, and generate datasets beyond what each of these facilities could … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

… and he has a project with the JGI to synthesize the genes for and explore the chemistry of quorum sensing … other functions depending on their concentration and their context. When I refer to quorum sensing, I’m talking about … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the … cutting-edge sequencing technologies and advanced genomic analysis to explore the rich diversity of fungi and algae. … on large-scale sequencing efforts that survey the vast phylogenetic and ecological diversity of fungi and algae, …