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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … cells are characterized and selected as based on a specific functional trait or phenotype of interest, prior to and in … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science … as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … Large-Scale LOI #2 … CSP New Investigator Submission … CSP Functional Genomics Submission … FICUS Example #1 … FICUS …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … that there were multiple flagellum loss events during the diversification of terrestrial fungi, given that the … turned out to be a mixture of genetic material with various origins, ranging from fungi, plants to bacteria. Back in …
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Community Science Program
… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … call is for PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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CSP Large Scale Call
… on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based approaches to unravel functional capabilities of plants, microbes and microbial communities, global carbon …
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FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … Successful applications will focus on high-risk/high-payoff proposals within the focused topic areas that can be … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and functional genomic data and serving them to users via the …
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Micro-Scale Applications Group
Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … the quality of single-cell genomes and directly link functional information with individual cells. Research Team  … measure environmental microbiome activity levels.This functional assay lets us move beyond cataloging the genes of …
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FICUS Overview
… to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National User Facilities into … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … repositories until the earliest of three points:  (1) publication of the data (including, but not limited to, …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In an effort to fingerprint the pathogen and trace its origins, the researchers engaged the DOE Joint Genome … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … Tyler BM et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis . …
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