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DNA Synthesis Science User Advisory Committee
… The DNA Synthesis Science User Advisory Committee is chartered by the Program Head and report back to them. The Committee is chartered to … on the effective management and strategic objectives of the programs. The Committee serves as the Program's key …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … of their synthases so that we can start to use the DNA sequence to predict or just understand better the language … Episode Transcript … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Industry Engagement Program
… joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … to test hypotheses via designed and assembled physical DNA constructs that can then be functionally characterized.  … and environmental samples by using advanced computer analysis coupled with liquid chromatography mass …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … wise maybe, what genome mining is, then, is looking at DNA sequence and trying to find the things that you want to … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … at genomes and seeing where the really hard things to sequence were, and wondering what those … what those were … at the Broad that was looking to develop new methods for DNA sequencing of microbes. And what kept breaking our …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … artificial Intelligent/machine learning approaches in data analysis and interpretation is creating new opportunities … in the group include the sequencing and comparative analysis of thousands of archaeal and bacterial type strains …
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …
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Microbial Program
… Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … explored to predict microbial lifestyles using AI-driven analysis of such datasets. The program also collaborates …
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Natural Prodcast Episode 12: Nadine Ziemert
… Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger … to hear from you. We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural …
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Protocols
… Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction … Tips for High Molecular Weight DNA extraction: …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial …
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Frequently Asked Questions: Project Management
… Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA Synthesis projects: Miranda Harmon-Smith Metabolomics … You can visit the Products & Offerings section of our website for more details, including …
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