Search

… artificial Intelligent/machine learning approaches in data analysis and interpretation is creating new opportunities … Other projects in the group include the sequencing and comparative analysis of thousands of archaeal and bacterial … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, … would have really done a somewhat exhaustive chemical analysis of a bacterium that they’re interested in, usually …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … tools and visualization resources that support user analysis of biogeochemically-relevant pathways, enabling … The JGI supports microbiome data science by enabling comparative genomics and metagenomics analysis through the …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to …

… to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … a combination of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity … the JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples …

The JGI Project Management Office carries out a number of activities to facilitate … has completed, your Project Manager will initiate analysis with the appropriate JGI analysis team. During this … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … take to improve on the data side of things and sequencing analysis side of things to really start to be able to …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and … of genome and metagenome datasets in a comprehensive comparative context. The IMG data warehouse integrates …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … is a dynamic and complex ecosystem that includes bacteria, fungi, viruses. Resident viruses can be found in a myriad of … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …