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… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … Frankia . And so the Frankia are bacteria that live in the root nodules of plants. And these guys were sequenced, and … products because they’re easy to find. They grow in the soil. These are the same guys that produce geosmin. And so …

… functional genome annotation, improves understanding of the role small molecules play in diverse biological … based methods in combination with advanced computational analysis.   Overview of metabolomics products At JGI, … they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …

… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … take to improve on the data side of things and sequencing analysis side of things to really start to be able to …

… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to …

… Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified fungal gene families that help determine …

… The Plant Program Advisory Committee is chartered to offer advice, guidance and counsel on the effective management and strategic objectives of the plant program. The committee serves as the program's key external advisory panel and as advocates of the program's strategy, operations and scientific …

… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … the need to have a limited and time-sensitive protection of certain types of data to support their use by those … data. The JGI Data Policy applies to research data and analysis products (referred to as “data” for the remainder …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find … Exploring the fascinating world of giant viruses, which challenge our understanding of viral …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the … provides customized analysis, the JGI also participates in publication of results. …

… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental … gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which …

… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … for antibiotics and the microbes that make them is in the soil. There’s … uh… there’s an issue there though, in that … really trying to drive discovery. So from that six, it’s grown to the over 10,000 per year number. And very quickly, …