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…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our … An assay used for profiling transcription factor binding sites across entire … The JGI uniquely offers quantitative Stable Isotope Probing (SIP) Metagenomics to the …

… DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … DAN UDWARY: So Alison, I’m really excited today. We have, by far, I think, one of the most decorated and legendary …

… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … cluster with me because it turns out that oftentimes in bacterial genomes if you have a quorum sensing system or the … Episode Transcript … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … SMC itself. Like that’s I don’t know. But we do have the taxonomy. We do have sort of the kingdom through species …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … Episode Transcript … genome mining over the years, and we talk about a new publication out of JGI in Nature Biotechnology , for which …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, … The Metagenome Program focuses on the high-throughput sequencing of …

… Data produced and released by the US Department of Energy (DOE) … Embargo : A period in which data is not publicly available in … is granted to proposal PIs, Co-PIs, and collaborators of any given proposal. Third parties (often referred to as … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting …

… The Facilities Integrating Collaborations for User Science … for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … beyond what each of these facilities could generate by itself.   Accepted projects must address or be otherwise …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … this collection in total contains approximately 100,000 bacterial strains, and a hundred thousand fungal strains. … Episode Transcript … This is our conversation with Professor Ben Shen, from The Scripps Research …

… Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …

… DAN UDWARY: You’re listening to the Department of Energy … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … a lot of problems that we notice as well is, for example, taxonomy. It’s always wrong. So we need a standard in that. …