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… DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion … interviews, but instead it’s two interviews in one. My new co-host, Jackie Winter, has been on a few episodes now, … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …

… DAN: You’re listening to the US Department of Energy Joint … which might lead you to changes in bioactivity, and new uses for these peptides in medicine or materials science … them. And so, I spent a number of years trying various methods, back in the old days, to figure out how they’re …

… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … Right. Kate Duncan: And Pseudonocardia . And we’ve got new species which we’re currently in the process of almost … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …

… DAN UDWARY: You’re listening to the Department of Energy … analogy to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …

… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural … that genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the … Episode Transcript … In this episode, Alison and I talk to Marnix Medema, from Wageningen …

…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and … An assay used for profiling transcription factor binding … been further scaled to a multiplexed DAP-seq (multiDAP-seq) method allowing high-throughput processing of samples in …

… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome … The Metabolomics Program is focused on understanding the critical …

… Every approved proposal starts with a User Agreement — before any … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … address the DNA Synthesis program. When fully executed, the new User Agreement will replace the active version. For …

… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of … Phylogenetic diversity estimates show that the gap between cultivated and uncultivated … genomes in the public domain, the bulk of which belong to only three phyla. The Woyke group uses single-cell …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural … have a better understanding of what is what. This is not new. It actually was first proposed by two authors called … Episode Transcript … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

…   The JGI’s Secondary Metabolites Program focuses on the exploration of … for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in … and their roles in the environment, can unlock new avenues for bio-based products and bioenergy crop …

… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique opportunity for researchers to request the capabilities and expertise of multiple DOE … provides customized analysis, the JGI also participates in publication of results. …