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A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants
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User Support
… authentication enabled to log in. Check our Help Site for additional information, including a Login Walkthrough and FAQ . –– The … IMG , GOLD and others for data annotation and submission Tracking, monitoring and expediting laboratory processing …
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Natural Prodcast Episode 2: The Primer, Part 2
… and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have … so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … Frankia . And so the Frankia are bacteria that live in the root nodules of plants. And these guys were sequenced, and …
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Project Management Office
… help with: preparing a Statement of Work, completing a formal User Agreement, and ultimately launching the user’s project. See below for details on each step. … Before work can start on any approved proposal – including the submission of samples for sequencing, or the submission of sequencing data for …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot … with a contract manufacturer to actually have them build a plant for production and fermentation and transfer that … risks that would lead to things like leakage of organism, plant, product, et cetera. But yeah, I think it allowed us …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… Mexico, and an incredibly bright guy who’s been thinking for a long time about the evolution and natural products … could be a reasonable number if you are talking about a plant and a microbe interacting very stably. So it makes … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often … clusters. So, in the ABC portal here at JGI, ABC being the Atlas of Biosynthetic Clusters , which is a subsection of …
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Natural Prodcast Episode 5: Brad Moore
… and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … chemicals that are coming out of organisms, whether it be a plant or from the bottom of the ocean, from a sponge, or a … right from the beginning, I always wanted to be true to my roots, and always work with marine systems because that’s …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute … a team that  recently published work on the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 … We looked at the plant’s response in the aboveground and root tissues. The striking thing we found was related to …
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Natural Prodcast Episode 12: Nadine Ziemert
… welcome, Nadine. ALISON TAKEMURA: What is the big picture for you in your lab? NADINE ZIEMERT: Big picture, I want to … before yours, we had Roger Linnington on to talk about NP Atlas. And we got talking about what it would take to expand … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and ready … Genomics, there was a subsection of that called ABC, the Atlas of Biosynthetic Clusters. And at the time, it was a … And so we also sequence a lot of fungi, and we sequence plants. And so we started thinking about if we had a …
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Special Initiatives & Programs
… sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … in the BER funding call, proposals are NOT eligible for BERSS support through the JGI (with the exceptions of … DE-FOA-0003453 and DE-FOA-0003615 , which are both eligible for BERSS). Available Resources All JGI products are …
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