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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … secrete a lot more things than people do…? Although I don’t study people so maybe I’m wrong. But yeah, I mean, because I … products because they’re easy to find. They grow in the soil. These are the same guys that produce geosmin. And so …
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New Lineages of Life Group
Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature Communications. 9 (1), 1-9 Schulz …
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Natural Prodcast Episode 11: Marnix Medema
… what was this bacterium, and why did your group want to study it? Marnix Medema: You mean the PhD project that I … primer episode, we talked about genome mining through some metagenome associated genomes. And yes, antiSMASH is … the action of the microbiome because if you sterilize the soil, the protective effect is gone. You can transplant the …
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Natural Prodcast Episode 16: Marcy Balunas
Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. How are you?  MARCY: Am fine. I live in a … now?  MARCY: Sure. So my lab has really converged on the study of host-microbe chemistry. And the interactions– As … I really became more and more interested in cancer drug discovery and pharmacology but I didn’t know how to get …
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Game On: High School Students Drive Everglades Metagenomics Study
… in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to help train the … Jonathan’s email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy … do an environmental microbial community (metagenomic) soil study in an untouched region of the Everglades, the …
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Metabolomics
… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that … systems, sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI … they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 2
… and postdoc at Lawrence Livermore National Laboratory, is using bioinformatics and isotopes to track how viruses influence the flow of carbon in permafrost.  …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as … … Adaptive strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during simulated range shifts of …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… right. Welcome back to Natural Prodcast. I did it. I’m keeping to my schedule. This should be coming out on the first … into natural products by starting out in synthesis and then discovering more-- [LAUGHS] I don't know, practical or … or online catalog, I guess. So we've also been able to get soils from Purdue campus itself and been able to actually …
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Prokaryote Program User Advisory Committee
… management and strategic objectives of the microbial and metagenome programs and report back to them. The Committee …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of … genes with functions useful for forest recovery, this study sheds light on how microbes contribute as a forest …
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