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Secondary Metabolites Program
The program works to uncover these hidden biochemical resources by exploring the genetic pathways responsible for … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous … Prodcast … Secondary Metabolites Program in Detail … Projects and Initiatives … Secondary Metabolites Program …
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User Programs
ONGOING Who Should Apply? Investigators with research projects that integrate the expertise and capabilities of multiple user facilities Investigators with DOE mission-relevant projects that call for expansive … August 2025 November 2025 March 2026 …   Learn more about our individual calls and other opportunities to work with …
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Alabama Agricultural & Mechanical University Internship Program
Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in … confident and ready to tackle real-world scientific issues. Our interns say their experiences allowed them to:  Learn … and confidence in their own abilities. …   Want to see past projects? Read more below         …   Internship Snapshots …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** … counted once, even though an individual may have several projects/roles. Sequencing Quarter Total Bases (Trillions) …
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University of California, Merced Internship Program
… research experience at the JGI, the Genomics Internship Program soon expanded to include undergraduate students. To … and confidence in their own abilities. …   Want to see past projects? Read more below       …   Internship Snapshots   …
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Special Initiatives & Programs
… synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  BER … DE-FOA-0003453, which is eligible for BERSS). Available Resources All JGI products are available through BERSS. Learn … resources for genomic research and sequence-based science.  Projects include de novo generation of genome data, …
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IMG Group
… genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … within IMG. While ANI is integrated within IMG, ani.jgi.doe.gov serves the current data. … The mission of the … Microbial Genomes (IMG) system serves as a community resource for analysis and annotation of genome and metagenome …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership … role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon cycling and … that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, …
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How To Use Our Systems
… … Information on Software Looking for information on our software, including BBTools ? Click to find that on our archive site.  …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will … DSM16522 R Robertson, et. al.  2023 . Microbiology Resource Announcements. 2023 12 (10), e00548-23 Whole genome …
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Natural Prodcast Episode 18: A CSP Primer
Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the best. Later on, I’ll … what are you going to do. So, you probably know that “DOE” is the United States Department of Energy, which is a … with the JGI. So, submitting proposals, and then working on projects through the CSP program, yeah, is a big part of …
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FICUS
… to request the capabilities and expertise of multiple DOE National User Facilities in one research proposal.  … an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range of … of Work document. … Shining a Light: Advanced Photon Source Capabilities for FICUS Research describes the …
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