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The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … requests not on this list, or to discuss experimental design for a proposal, we encourage you to contact the …

… unified access to all JGI genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI … are provided to display annotation data from many common software tools, and from many users. It is also a place where the community can upload new data for use by scientists and the public, and provide …

… analogy to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted … you see sometimes. So pretty recently, Merck put out some software called DeepBGC , which is a machine learning tool …

… in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … Reach the next generation of genome scientists and recruit new talent for biosciences.  Adopt-a-Genome has:  11 CSU … insights from sequence data, employing IMG data and tools for comparative analysis, visualization and …

Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … more into the meta genome mining. We started to build the tools for natural product researchers that easily can … to– DAN UDWARY: Yeah, that’s always a problem in academic software development. NADINE ZIEMERT: Yeah. And I think, …

… last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the … of biosynthetic gene clusters. So it’s actually a software tool and it takes as input – it takes genome …

Lab Intellectual Property Office to facilitate these new interactions.  The PDT enables industry engagement … Office (IPO) and read the Guide to Partnering with DOE’s National Laboratories . … Recent Partnerships … The … JGI Metabolomics Science Program Head Yasuo Yoshikuni, JGI DNA Synthesis Science Program Head Ian Blaby, JGI DNA …

The program’s fungal genomics research explores new metabolic processes and enzymes that can be applied in … the PhycoCosm portal. The Fungal & Algal Program aims to streamline genome analysis workflows for microbial … fungal and algal pangenomes, and integrate multi-omics tools to enhance functional studies. These efforts seek to …

… niche in chemical enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical capabilities … that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh Alison … with. DAN UDWARY: Yeah. ALISON NARAYAN: And there are other tools that I think are really useful, that again are set up …

… and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then …

Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable … energy and environmental challenges.  Commissioned for the JGI’s 25th anniversary, the JGI mural references dozens of … genomics. The two-story mural at the Integrative Genomics Building was painted by Berkeley-based artist Nigel Sussman …

… sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  sequencing technologies has … sequencing output while significantly lowering costs. Staff process samples, perform quality checks, and prep libraries …