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… Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of … potential of hard-to-culture microorganisms. This process enables our users to explore the genetic makeup of … colleagues, to quantify heavy isotope incorporation into DNA by active microbial populations (Hungate et al. 2015). …

… and state-of-the-art sample processing.  Our Biodesign platform enables users to test hypotheses via designed and assembled physical DNA constructs that can then be functionally characterized.  … data repositories for genome information with analysis tools for mining and prediction The JGI works in partnership …

… last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the … of biosynthetic gene clusters. So it’s actually a software tool and it takes as input – it takes genome …

… analogy to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted … you see sometimes. So pretty recently, Merck put out some software called DeepBGC , which is a machine learning tool …

… Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … more into the meta genome mining. We started to build the tools for natural product researchers that easily can … to– DAN UDWARY: Yeah, that’s always a problem in academic software development. NADINE ZIEMERT: Yeah. And I think, …

… The program’s fungal genomics research explores new metabolic processes and enzymes that can be applied in … the PhycoCosm portal. The Fungal & Algal Program aims to streamline genome analysis workflows for microbial … fungal and algal pangenomes, and integrate multi-omics tools to enhance functional studies. These efforts seek to …

… the technologies and enabling state-of-the-art sample processing and sequencing capabilities. The Genomic … through end-to-end automation — and further advancing sequence applications, single cell genomics, biodesign, and metabolomics capabilities.    Overview of …

… the required capabilities, they then ship samples—such as DNA and RNA for sequencing—to JGI. Users are responsible for … collection, and shipping; JGI will handle all subsequent processing from that point. JGI provides users with various … assemblies or differential gene expression results. For DNA synthesis projects, JGI ships physical materials like …

… JGI supports the entire data life cycle — from experimental design to reuse. Armed with the high-quality data we generate, tools like artificial intelligence can empower the global … JGI is involved in efforts to integrate data in support of new research questions that span domains. We also work with …

… niche in chemical enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical capabilities … that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh Alison … with. DAN UDWARY: Yeah. ALISON NARAYAN: And there are other tools that I think are really useful, that again are set up …

… provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols … Tips for High Molecular Weight DNA extraction: …

… The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic biology … We focus our efforts on integrating database mining and sequence design with scaling the production of large, … to improve automated assembly pipelines bringing in new technologies, in particular through adoption of lab …