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Natural Prodcast Episode 21: Elizabeth Parkinson
… outreach program to get kids interested in microbiology and microbial chemistry. All good stuff, and I hope you enjoy … or online catalog, I guess. So we've also been able to get soils from Purdue campus itself and been able to actually … have several undergrads from the lab go out and get soil from different areas around their dorm and things like …
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Natural Prodcast Episode 11: Marnix Medema
IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial … the action of the microbiome because if you sterilize the soil, the protective effect is gone. You can transplant the effect by taking the microbial fraction out of one soil, transplanting it into another soil, and then you also …
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Products
… physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial aggregate, or a specific subset of free-living … sample, annotation ( IMG/M ), binning Depends on project Microbial Minimal Draft, Isolate Draft quality microbial …
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DOE Metrics
Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. … computational method for improving the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] …
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Metabolomics
… they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …
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Natural Prodcast Episode 19: Bill Fenical
… powerful people. These were people that really controlled microbial drug discovery. And a guy like me, with no … are many others, including Streptomycetes, which are common soil bacteria. DAN UDWARY: Yeah, we talk about them a lot … even things that key out to what you would say are classic soil microorganisms from the ocean, half or more require …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a wildfire. The Science … burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process … return to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By …
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Natural Prodcast Episode 20: Brian Bachmann
… of thought with that. So some people are interested in cave microbial– people are interested in the more extreme … off through these areas. And you can do– with a teaspoon of soil from outside, you maybe have to do a 10,000-fold … is– for us, that’s dripping water, percolating through the soil through leaf litter and humic acids and those kind of …
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Mission
… went on to advance basic science by sequencing scores of microbial species as well as several model organisms and … behavior of microbiomes and manipulate them to facilitate microbial solutions to challenging environmental … to contaminants such as heavy metals or radionuclides in soils, freshwater, coastal sediments (coastal here defined  …
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Natural Prodcast Episode 14: Nigel Mouncey
I did my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for … spheroides . And that got me really interested in microbial gene regulation and some pathways. And I thought …
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Micro-Scale Applications Group
Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge … To provide additional functional insights into microbial genomes, the JGI now uses laser microdissection to selectively isolate and sequence microbial aggregates after first imaging with various …
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Single Cell Research Group
… in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … Woyke T ., Doud D. F. R., Schulz F. The trajectory of microbial single-cell sequencing. Nat Methods 14(11): … T . Insights into the phylogeny and coding potential of microbial dark matter. Nature 499, 431-7 (2013). Hess M., …
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