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How to Submit Sequencing Samples
… description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … the process. If you have any questions, please contact your Project Manager or jgi-project_managem[email protected] . … 1) … and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting step for many …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” … initiative, and our collaboration with Ben is an important part of that. I’m also going to mention that Ben talks … benefits. DAN: Now, you and I are working together on a project at the JGI to try to find new enediyne clusters and …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small … of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With advanced mass … and Gene Integration … Metabolomics Program in Detail … Projects and Initiatives … Metabolomics Program Head … …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  … links below. Naturalist Myco Ed Fungal Genomics Education Project MycoCosm MycoEd group page Protocols, teaching … fungal reference genomes, this program is an important initiative that expands and diversifies workforce …
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Sequencing Technologies
The Sequencing Technologies Group applies cutting edge molecular capabilities and state-of-the-art next-generation … allowed the JGI to increase sequencing output while significantly lowering costs. Staff process samples, perform quality … best for applications. The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the … pioneering functional genomics to solve the most relevant bioenergy and environmental problems.  The mission of … to DOE for final approval.  Following DOE approval, project managers negotiate project specifics with PIs …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” … and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have … in partnering with us, we want to hear from you! We have projects in genome sequencing, DNA synthesis, …
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Publication Policy
JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for … such efforts should specify the collaborative nature of the project, and authorship is expected to include all those contributing significantly to the work. The JGI has significant experience and …
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are … for the remainder of this policy) produced through all user projects accepted FY22 and later through the Community … in JGI systems or outside repositories. Full access is granted to proposal PIs, Co-PIs, and collaborators of any …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison … It’s a big international community effort, and I want to say thank you, personally, to everyone involved in … and doing medicinal chemistry, doing development of projects on a project-by-project basis. And the more time …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to … that support user analysis of biogeochemically-relevant pathways, enabling modeling of microbiomes based on … to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. … …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of … indemnification, patent rights, rights in technical data, project reporting to the DOE, and publication requirements. …
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