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Natural Prodcast Episode 10: A Primer on Genome Mining
… of Biosynthetic Clusters , which is a subsection of the IMG data portal , which is a larger portal for microbial … there that’s not JGI’s. It’s called MIBiG , which is the database that has the “minimum information about a … cluster makes a product and how a product should be synthesized based on its structure, that we should be able to tie …
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Partnerships: Adopt-A-Genome
… recruit new talent for biosciences.  Adopt-a-Genome has:  11 CSU educators working with the JGI 120 genomes claimed … biological insights from sequence data, employing IMG data and tools for comparative analysis, visualization … … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, comparative analysis, and …
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Natural Prodcast Episode 11: Marnix Medema
… efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells … being post-translationally modified into ribosomally synthesized peptide natural products. And they built a few of … of biosynthetic gene clusters. But with all of the other IMG kind of hooks into IMG’s data. IMG being Integrated …
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Natural Prodcast Episode 7: Ben Shen
Right, because they’re so reactive. BEN: …going back to the 1950s. But the structure of which was not known until the … from which potentially natural product could be biosynthesized, then you need to develop enabling technologies. ie … so everybody, readers of the library, can come to our databases and look for the specific information they are …
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IMG Webinar Series
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User Support
… execution by: Metadata verification and coordination with IMG , GOLD and others for data annotation and submission …
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IMG: the integrated microbial genomes database and comparative analysis system
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New Lineages of Life Group
… of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … metagenomics. Nature Reviews Microbiology volume 20, 721–736 JC Villada, F Schulz (2022) The endosymbiotic box of … 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature Communications. 9 (1), 1-9 Schulz et al. …
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Plant-Microbial Interactions Group
… symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … and complex ecosystem that includes bacteria, fungi, viruses. Resident viruses can be found in a myriad of … rhizobacterium (PGPR) Pseudomonas simiae WCS417. One suggested function of these phage genes is the …
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Complete genome sequence of Acidaminococcus fermentans type strain (VR4T)
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Natural Prodcast Episode 13: Francisco Barona Goméz
… him about more recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and … are microbes that will actually redefine how you synthesize nucleotides. Stuff that are at the core of what we call … that in certain niches, ecological niches, probably Marc Chevrette ‘s contribution to talk about this, he’s very …
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FICUS-NERSC/KBASE
… readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and availability, … projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on a regular basis, in accordance with JGI’s data release policy.  Interactions with applicants and others who …
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